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Silke Eckstein

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Dr. Silke Eckstein



Technische Universität Braunschweig
Institut für Informationssysteme
Mühlenpfordtstraße 23, 2.OG
D-38106 Braunschweig Deutschland


Phone: +49 (531) 391 7447
Email: eckstein@ifis.cs.tu-bs.de
Room: 232

Weitere Informationen

Silke Eckstein is an assistant professor (wissenschaftliche Assistentin) at the Institute for Information Systems at  TU Braunschweig where she heads the Bioinformatics research group. From April 2007 to March 2008 she provisionally chaired the Institute. For a short Curriculum Vitae see here.

 Research interests
-  Systems Biology
-  Modeling and Simulation of Biological Processes
-  Ontologies, Database Schemata, Evolution
-  Text Mining
-  XML Data Modeling
-  Object Oriented Specification Languages
-  Development of Information Systems

Services

Reviewer for international journals, PC member at several international conferences and workshops, external reviewer at several international conferences and workshops. For more details see here.

Teaching

- SS 09: Relational Database Systems 2

- WS 08/09: XML Databases

For a complete overview (in German) see here.

 

Consultation hour: Tuesdays, 12:30 - 13:30 and on appointment.

 

Please find more information on my old homepage.

Publikationen
2009
Mathiak B., Kupfer A., Eckstein S., "Using Layout Data for the Analysis of Scientific Literature", Mining Complex Data, vol. 165: Springer, pp. 3-22, 2009. TaggedBibTexxml
2008
Täubner C., Eckstein S., "Modellierung und Simulation biologischer Prozesse mit diskreten Modellierungssprachen: ein MDE-Ansatz", Modellierung 2008, Berlin, Springer, pp. 149-164, 03/2008. Abstract TaggedBibTexxml
Täubner C., Eckstein S., "Signal Transduction Pathways as Concurrent Reactive Systems: A Modeling and Simulation Approach Using LSCs and the Play-Engine", Electronic Notes in Theoretical Computer Science, vol. 194, no. 3, pp. 149-164, 2008. TaggedBibTexxml
2007
Kupfer A., Eckstein S., Störmann B., Mathiak B., "A database ontology for signal transduction pathways", Int. J. of Bioinformatics Research and Applications, vol. 3, pp. 326-340, 09/2007. TaggedBibTexxml
Eckstein S., Täubner C., "An Extendable System for Conceptual Modeling and Simulation of Signal Transduction Pathways", International Workshop on Conceptual Modelling for Life Sciences Applications (CMLSA 2007) at ER 2007: Springer, pp. 54-63, 2007. Abstract TaggedBibTexxml
Gomez Llana A., Carsi J A., Boronat A., Ramos I., Täubner C., Eckstein S., "Biological Data Migration using a Model-Driven Approach", ATEM 2007 - 4th International Workshop on (Software) Language Engineering, 2007. Abstract TaggedBibTexxml
Mathiak B., Kupfer A., Rio Bartulos C., Scope T., Weiland J., Eckstein S., "Discovering gene expression data from the tables of full text publications", ICDM Workshop on Mining and Management of Biological Data, Omaha, Nebraska, USA, IEEE Computer Society, pp. 113-118, 2007. Abstract TaggedBibTexxml
Kupfer A., Eckstein S., Störmann B., Neumann K., Mathiak B., "Methods for a Synchronised Evolution of Databases and Associated Ontologies", Frontiers in Artificial Intelligence and Applications, vol. 155: IOS Press, pp. 89-102, 2007. Abstract TaggedBibTexxml
Täubner C., Mathiak B., Eckstein S., "Modeling and management of signal transduction pathways with life sequence charts", ICDM Workshop on Mining and Management of Biological Data, Omaha, Nebraska, USA, IEEE Computer Society, pp. 119-126, 2007. Abstract TaggedBibTexxml
Täubner C., Eckstein S., "Signal Transduction Pathways as Concurrent Reactive Systems: A Modeling and Simulation Approach using LSCs and the Play-Engine", FBTC 2007 - From Biology To Concurrency and back. Workshop at Concur 2007, 2007. Abstract TaggedBibTexxml
Neumann K., Eckstein S., "Towards Meta-Automating the German Real Estate Map", International Symposium on LandCover Logic: LNI, pp. 55-68, 2007. Abstract TaggedBibTexxml
2006
Kupfer A., Eckstein S., Neumann K., Mathiak B., "A Coevolution Approach for Database Schemas and Related Ontologies", 19. IEEE Int. Symposium on Computer-Based Medical Systems: IEEE CS, pp. 605-610, June, 2006. Abstract TaggedBibTexxml
Ehrich H -D., Eckstein S., Mathiak B., Kupfer A., Täubner C., "Bioinformatik: Erkenntnisse aus der Datenflut?", 18. Workshop Grundlagen von Datenbanken, pp. 13-32, June, 2006. Abstract TaggedBibTexxml
Kupfer A., Eckstein S., Neumann K., Mathiak B., "Handling Changes of Database Schemas and Corresponding Ontologies", Advances in Conceptual Modeling - Theory and Practice - ER Workshops 2006: Springer, pp. 227-236, Nov, 2006. Abstract TaggedBibTexxml
Mathiak B., Kupfer A., Münch R., Täubner C., Eckstein S., "Improving Literature Preselection by Searching for Images", Knowledge Discovery in Life Science Literature: Springer LNBI 3886, pp. 18-28, April, 2006. Abstract TaggedBibTexxml
Kupfer A., Eckstein S., Neumann K., Mathiak B., "Keeping Track of Changes in Database Schemas and Related Ontologies", 7. Int. Baltic Conference on Databases and Information Systems: IEEE, pp. 63-68, July, 2006. Abstract TaggedBibTexxml
Täubner C., Mathiak B., Kupfer A., Fleischer N., Eckstein S., "Modelling and Simulation of the TLR4 Pathway with Coloured Petri Nets", 28th Annual International Conference of IEEE Engineering in Medicine and Biology Society: IEEE, pp. 221, 30. August - 3. , 2006. Abstract TaggedBibTexxml
Mathiak B., Kupfer A., Scope T., Störmann B., Eckstein S., "Using Image Classification for biomedical Literature Retrieval", ICDM Workshops 2006, pp. 185-189, 2006. Abstract TaggedBibTexxml
2005
Mathiak B., Kupfer A., Münch R., Täubner C., Eckstein S., "Analysing layout information: searching PDF documents for pictures", LWA 2005 Lernen - Wissen - Adaptivität, pp. 190-195, 2005. Abstract TaggedBibTexxml
Mathiak B., Kupfer A., Täubner C., Eckstein S., Münch R., "CaptionSearch: Mining Images from Publications", Mining Complex Data Proceedings of 2005 IEEE ICDM Workshop: Math. Dept., Saint Mary's Univ., Nova Scotia, Canada, 2005. Abstract TaggedBibTexxml
Kupfer A., Eckstein S., "Coevolution of Database Schemas and Associated Ontologies in Biological Context", 22nd British National Conference on Databases: Workshops and Posters, vol. 2: University of Sunderland Press, pp. 45-50, 2005. Abstract TaggedBibTexxml
Mathiak B., Kupfer A., Münch R., Täubner C., Eckstein S., "Mining PDF documents for pictures", European Web Mining Forum (EWMF 2005), pp. 52-63, 2005. Abstract TaggedBibTexxml
2004
Mathiak B., Eckstein S., Automatische Lernverfahren zur Analyse von biomedizinischer Literatur, , no. 2004-2: Technische Universität Braunschweig, 2004. Abstract TaggedBibTexxml
Eckstein R., Eckstein S., "Conceptual Modeling XML-Schemata Using UML", Proc. CAiSE'04 Forum, 15th Int. Conf. on Advanced Information Systems Engineering, pp. 122 - 131, 2004. Abstract TaggedBibTexxml
Mathiak B., Eckstein S., "Five steps to text mining in biomedical literature", WS on Data Mining and Text Mining for Bioinformatics at PKDD/ECML 2004. Proc. 15th European Conf. on Machine Learning and the 8th European Conf. on Principles and Practice of Knowledge Discovery in Databases, pp. 43-47, 2004. Abstract TaggedBibTexxml
Neumann K., Ahlbrecht P., Eckstein S., Mathiak B., Kupfer A., "Visualization of Landscape Data in Digital Maps by Exclusive Use of XML-Based Languages", Proc. 12th Int. Conf. on Geoinformatics, pp. 370 - 374, 2004. Abstract TaggedBibTexxml
Eckstein R., Eckstein S., XML und Datenmodellierung. XML-Schema und RDF zur Modellierung von Daten und Metadaten einsetzen, : dpunkt.verlag, 2004. Abstract TaggedBibTexxml
2003
Ahlbrecht P., Eckstein S., Neumann K., "Conceptual Modelling of Mobile Object Systems: Some Language Constructs", Proc. Short Papers at 15th Conf. on Advanced Information Systems Engineering, pp. 89-92, 2003. Abstract TaggedBibTexxml
Ahlbrecht P., Eckstein S., Neumann K., "Conceptual Modelling of Mobile Object Systems: Language Constructs for Distinguishing Between Mobile and Stationary Subsystems", COMPSAC'03. Proc. 27th Annual Int. Computer Software and Applications Conference., pp. 144-150, 2003. Abstract TaggedBibTexxml
Neumann K., Eckstein S., "Geography Markup Language (GML) - Eine Einführung aus Informatiksicht", Mitteilungen des Bundesamtes für Kartographie und Geodäsie, no. 24, pp. 103-111, 2003. Abstract TaggedBibTexxml Download: NE03.pdf 91 KB
Ahlbrecht P., Eckstein S., Neumann K., "Language Constructs for Conceptual Modelling of Mobile Object System s", Proc. 4th Int. Symp. on Collaborative Technologies and Systems, pp. 121-126, 2003. Abstract TaggedBibTexxml
2001
Eckstein S., Ahlbrecht P., Neumann K., "Increasing Reusability in Information Systems Development by Applying Generic Methods", Proc. 13th Int. Conf. on Advanced Information Systems Engineering (CAiSE'01), Interlaken: Springer, pp. 251-266, 2001. Abstract TaggedBibTexxml
Eckstein S., Module für verteilte Objektsysteme -- Konzepte zur Strukturierung und Wiederverwendung objektorientierter Spezifikationen, , vol. 77: infix-Verlag, 2001. Abstract TaggedBibTexxml
Eckstein S., Ahlbrecht P., Neumann K., "Techniques and Language Constructs for Developing Generic Information Systems: A Case Study", Int. Symp. on Software Reusability (SSR'01), Toronto: ACM, pp. 145-154, 2001. Abstract TaggedBibTexxml
2000
Neumann K., Eckstein S., "Einführung in die Unified Modeling Language am Beispiel von ATKIS", Mitteilungen des Bundesamtes für Kartographie und Geodäsie, no. 17, pp. 81-88, 2000. Abstract TaggedBibTexxml